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Clinical and molecular characterization of SLC31A1-related developmental and epileptic encephalopathy: insights from 13 new cases

Juliá-Palacios, N; Muñoz-Pujol, G; Maroofian, R; Bertoli-Avella, AM; Gómez-Chiari, M; Muchart-López, J; Paredes-Fuentes, AJ; O’Callaghan, M; Machado-Casas, IS; Cristian, I; et al. Juliá-Palacios, N; Muñoz-Pujol, G; Maroofian, R; Bertoli-Avella, AM; Gómez-Chiari, M; Muchart-López, J; Paredes-Fuentes, AJ; O’Callaghan, M; Machado-Casas, IS; Cristian, I; Morrison, J; Garcia-Cazorla, A; Codina, A; Miryounesi, M; Zonic, E; Bauer, P; Cheema, H; Anjum, MN; Al-Sannaa, N; Abd Elmaksoud, M; Ababneh, F; Alijanpour, S; Tonekaboni, SH; Fayazi, A; Urbaniak, M; Barba, U; Hoenicka, J; Palau, F; Houlden, H; Ortigoza-Escobar, JD; Ribes, A; Santos-Ocaña, C; Tyler, M; Gaffney, P; Carroll, CJ; Tort, F; Wierenga, KJ; Webb, BD; Artuch, R; Baide-Mairena, H; Urreizti, R (2025) Clinical and molecular characterization of SLC31A1-related developmental and epileptic encephalopathy: insights from 13 new cases. Brain Communications, 7 (5). fcaf348. ISSN 2632-1297 https://doi.org/10.1093/braincomms/fcaf348
SGUL Authors: Carroll, Christopher John

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Abstract

Copper is indispensable for various metabolic processes, notably mitochondrial respiration. In humans, copper homeostasis hinges on transporters such as copper transporter 1 (CTR1), encoded by the SLC31A1 gene. Recently, bi-allelic mutations in SLC31A1 have been associated with a new neurodevelopmental disorder. This study presents clinical, genetic, and biochemical findings from 13 new cases across 10 families worldwide. RNA sequencing evaluated gene expression, and Western blotting assessed copper transporter 1 protein levels. Additionally, mitochondrial respiratory capacity was measured via high-resolution respirometry. Affected individuals exhibited a distinct clinical phenotype characterized by early-onset epileptic encephalopathy, severe neurodevelopmental delay and hypotonia, with high mortality. Neuroimaging revealed significant brain atrophy and white matter abnormalities. Genetic analysis identified bi-allelic SLC31A1 variants, predominantly p.His120Gln in six cases and p.(Arg102Cys/His) in three cases. Functional studies in patient fibroblasts demonstrated impaired mitochondrial respiration. This study significantly broadens the clinical spectrum of this recently described syndrome, presenting as a severe developmental encephalopathy with high mortality risk, and suggests mitochondrial dysfunction as a potential pathomechanism. These findings contribute to the mounting evidence linking copper transporter 1 dysfunction to neurodegeneration, underscoring the urgency for further therapeutic investigations.

Item Type: Article
Additional Information: © The Author(s) 2025. Published by Oxford University Press on behalf of the Guarantors of Brain. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
Keywords: CTR1 modelling, brain MRI, clinical delineation, functional validation
SGUL Research Institute / Research Centre: Academic Structure > Cardiovascular & Genomics Research Institute
Academic Structure > Cardiovascular & Genomics Research Institute > Genomics
Journal or Publication Title: Brain Communications
ISSN: 2632-1297
Language: en
Media of Output: Electronic-eCollection
Related URLs:
Publisher License: Creative Commons: Attribution 4.0
Projects:
Project IDFunderFunder ID
SLT002/16/00174Departament de Salut de la Generalitat de CatalunyaUNSPECIFIED
2021:SGR 01423Agència de Gestió d'Ajuts Universitaris i de Recercahttps://doi.org/10.13039/501100003030
EJPRD22-123European Joint Programmes on Rare DiseasesUNSPECIFIED
UNSPECIFIEDGeneralitat de Catalunyahttp://dx.doi.org/10.13039/501100002809
PI19/01310Instituto de Salud Carlos IIIhttp://dx.doi.org/10.13039/501100004587
PI23/00006Instituto de Salud Carlos IIIhttp://dx.doi.org/10.13039/501100004587
PI22/00856Instituto de Salud Carlos IIIhttp://dx.doi.org/10.13039/501100004587
PI20/00541Instituto de Salud Carlos IIIhttp://dx.doi.org/10.13039/501100004587
FI18/00253Instituto de Salud Carlos IIIhttp://dx.doi.org/10.13039/501100004587
UNSPECIFIEDAsociación de Enfermos de Patologías Mitocondriales (AEPMI)/Fundación Ana Carolina Diez Mahou’UNSPECIFIED
Dates:
Date Event
2025-09-23 Published
2025-09-22 Accepted
URI: https://openaccess.sgul.ac.uk/id/eprint/117961
Publisher's version: https://doi.org/10.1093/braincomms/fcaf348

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