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Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records.

Vyas, A; Aisopos, F; Vidal, M-E; Garrard, P; Paliouras, G (2022) Identifying the presence and severity of dementia by applying interpretable machine learning techniques on structured clinical records. BMC Med Inform Decis Mak, 22 (1). p. 271. ISSN 1472-6947 https://doi.org/10.1186/s12911-022-02004-3
SGUL Authors: Garrard, Peter

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Abstract

BACKGROUND: Dementia develops as cognitive abilities deteriorate, and early detection is critical for effective preventive interventions. However, mainstream diagnostic tests and screening tools, such as CAMCOG and MMSE, often fail to detect dementia accurately. Various graph-based or feature-dependent prediction and progression models have been proposed. Whenever these models exploit information in the patients' Electronic Medical Records, they represent promising options to identify the presence and severity of dementia more precisely. METHODS: The methods presented in this paper aim to address two problems related to dementia: (a) Basic diagnosis: identifying the presence of dementia in individuals, and (b) Severity diagnosis: predicting the presence of dementia, as well as the severity of the disease. We formulate these two tasks as classification problems and address them using machine learning models based on random forests and decision tree, analysing structured clinical data from an elderly population cohort. We perform a hybrid data curation strategy in which a dementia expert is involved to verify that curation decisions are meaningful. We then employ the machine learning algorithms that classify individual episodes into a specific dementia class. Decision trees are also used for enhancing the explainability of decisions made by prediction models, allowing medical experts to identify the most crucial patient features and their threshold values for the classification of dementia. RESULTS: Our experiment results prove that baseline arithmetic or cognitive tests, along with demographic features, can predict dementia and its severity with high accuracy. In specific, our prediction models have reached an average f1-score of 0.93 and 0.81 for problems (a) and (b), respectively. Moreover, the decision trees produced for the two issues empower the interpretability of the prediction models. CONCLUSIONS: This study proves that there can be an accurate estimation of the existence and severity of dementia disease by analysing various electronic medical record features and cognitive tests from the episodes of the elderly population. Moreover, a set of decision rules may comprise the building blocks for an efficient patient classification. Relevant clinical and screening test features (e.g. simple arithmetic or animal fluency tasks) represent precise predictors without calculating the scores of mainstream cognitive tests such as MMSE and CAMCOG. Such predictive model can identify not only meaningful features, but also justifications of classification. As a result, the predictive power of machine learning models over curated clinical data is proved, paving the path for a more accurate diagnosis of dementia.

Item Type: Article
Additional Information: © The Author(s) 2022. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
Keywords: CAMCOG, Data science, Dementia, LIME, Machine learning, Mini mental score, Aged, Algorithms, Dementia, Electronic Health Records, Humans, Machine Learning, Neuropsychological Tests, Humans, Dementia, Neuropsychological Tests, Algorithms, Aged, Electronic Health Records, Machine Learning, Dementia, Mini mental score, Machine learning, Data science, LIME, CAMCOG, 0806 Information Systems, 1103 Clinical Sciences, Medical Informatics
SGUL Research Institute / Research Centre: Academic Structure > Molecular and Clinical Sciences Research Institute (MCS)
Journal or Publication Title: BMC Med Inform Decis Mak
ISSN: 1472-6947
Language: eng
Dates:
DateEvent
17 October 2022Published
8 August 2022Accepted
Publisher License: Creative Commons: Attribution 4.0
Projects:
Project IDFunderFunder ID
UNSPECIFIEDMedical Research CouncilUNSPECIFIED
UNSPECIFIEDDepartment of HealthUNSPECIFIED
727658Horizon 2020http://dx.doi.org/10.13039/501100007601
PubMed ID: 36253849
Web of Science ID: WOS:000869249000001
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/115068
Publisher's version: https://doi.org/10.1186/s12911-022-02004-3

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