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Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk.

Shrine, N; Izquierdo, AG; Chen, J; Packer, R; Hall, RJ; Guyatt, AL; Batini, C; Thompson, RJ; Pavuluri, C; Malik, V; et al. Shrine, N; Izquierdo, AG; Chen, J; Packer, R; Hall, RJ; Guyatt, AL; Batini, C; Thompson, RJ; Pavuluri, C; Malik, V; Hobbs, BD; Moll, M; Kim, W; Tal-Singer, R; Bakke, P; Fawcett, KA; John, C; Coley, K; Piga, NN; Pozarickij, A; Lin, K; Millwood, IY; Chen, Z; Li, L; China Kadoorie Biobank Collaborative Group; Wijnant, SRA; Lahousse, L; Brusselle, G; Uitterlinden, AG; Manichaikul, A; Oelsner, EC; Rich, SS; Barr, RG; Kerr, SM; Vitart, V; Brown, MR; Wielscher, M; Imboden, M; Jeong, A; Bartz, TM; Gharib, SA; Flexeder, C; Karrasch, S; Gieger, C; Peters, A; Stubbe, B; Hu, X; Ortega, VE; Meyers, DA; Bleecker, ER; Gabriel, SB; Gupta, N; Smith, AV; Luan, J; Zhao, J-H; Hansen, AF; Langhammer, A; Willer, C; Bhatta, L; Porteous, D; Smith, BH; Campbell, A; Sofer, T; Lee, J; Daviglus, ML; Yu, B; Lim, E; Xu, H; O'Connor, GT; Thareja, G; Albagha, OME; Qatar Genome Program Research (QGPR) Consortium; Suhre, K; Granell, R; Faquih, TO; Hiemstra, PS; Slats, AM; Mullin, BH; Hui, J; James, A; Beilby, J; Patasova, K; Hysi, P; Koskela, JT; Wyss, AB; Jin, J; Sikdar, S; Lee, M; May-Wilson, S; Pirastu, N; Kentistou, KA; Joshi, PK; Timmers, PRHJ; Williams, AT; Free, RC; Wang, X; Morrison, JL; Gilliland, FD; Chen, Z; Wang, CA; Foong, RE; Harris, SE; Taylor, A; Redmond, P; Cook, JP; Mahajan, A; Lind, L; Palviainen, T; Lehtimäki, T; Raitakari, OT; Kaprio, J; Rantanen, T; Pietiläinen, KH; Cox, SR; Pennell, CE; Hall, GL; Gauderman, WJ; Brightling, C; Wilson, JF; Vasankari, T; Laitinen, T; Salomaa, V; Mook-Kanamori, DO; Timpson, NJ; Zeggini, E; Dupuis, J; Hayward, C; Brumpton, B; Langenberg, C; Weiss, S; Homuth, G; Schmidt, CO; Probst-Hensch, N; Jarvelin, M-R; Morrison, AC; Polasek, O; Rudan, I; Lee, J-H; Sayers, I; Rawlins, EL; Dudbridge, F; Silverman, EK; Strachan, DP; Walters, RG; Morris, AP; London, SJ; Cho, MH; Wain, LV; Hall, IP; Tobin, MD (2023) Multi-ancestry genome-wide association analyses improve resolution of genes and pathways influencing lung function and chronic obstructive pulmonary disease risk. Nat Genet, 55 (3). pp. 410-422. ISSN 1546-1718 https://doi.org/10.1038/s41588-023-01314-0
SGUL Authors: Strachan, David Peter

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Abstract

Lung-function impairment underlies chronic obstructive pulmonary disease (COPD) and predicts mortality. In the largest multi-ancestry genome-wide association meta-analysis of lung function to date, comprising 580,869 participants, we identified 1,020 independent association signals implicating 559 genes supported by ≥2 criteria from a systematic variant-to-gene mapping framework. These genes were enriched in 29 pathways. Individual variants showed heterogeneity across ancestries, age and smoking groups, and collectively as a genetic risk score showed strong association with COPD across ancestry groups. We undertook phenome-wide association studies for selected associated variants as well as trait and pathway-specific genetic risk scores to infer possible consequences of intervening in pathways underlying lung function. We highlight new putative causal variants, genes, proteins and pathways, including those targeted by existing drugs. These findings bring us closer to understanding the mechanisms underlying lung function and COPD, and should inform functional genomics experiments and potentially future COPD therapies.

Item Type: Article
Additional Information: Correction available at https://doi.org/10.1038/s41588-023-01531-7 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. © The Author(s) 2023
Keywords: Humans, Lung, Genome-Wide Association Study, Genetic Predisposition to Disease, Pulmonary Disease, Chronic Obstructive, Smoking, Polymorphism, Single Nucleotide, China Kadoorie Biobank Collaborative Group, Qatar Genome Program Research (QGPR) Consortium, Lung, Humans, Pulmonary Disease, Chronic Obstructive, Genetic Predisposition to Disease, Smoking, Polymorphism, Single Nucleotide, Genome-Wide Association Study, 06 Biological Sciences, 11 Medical and Health Sciences, Developmental Biology
SGUL Research Institute / Research Centre: Academic Structure > Population Health Research Institute (INPH)
Journal or Publication Title: Nat Genet
ISSN: 1546-1718
Language: eng
Dates:
DateEvent
13 March 2023Published
25 January 2023Accepted
Publisher License: Creative Commons: Attribution 4.0
Projects:
Project IDFunderFunder ID
MR/N011317/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
MR/P00167X/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
R01 HL131565NHLBI NIH HHSUNSPECIFIED
R01 HL153248NHLBI NIH HHSUNSPECIFIED
MC_PC_19004Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
204801/Z/16/ZMedical Research Councilhttp://dx.doi.org/10.13039/501100000265
AA/18/3/34220British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
NIH K08 HL136928National Institutes of Healthhttp://dx.doi.org/10.13039/100000002
U01 HL089856National Institutes of Healthhttp://dx.doi.org/10.13039/100000002
R01 HL155749National Institutes of Healthhttp://dx.doi.org/10.13039/100000002
2003629National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
1186046Department of Health Western AustraliaUNSPECIFIED
WT202849/Z/16/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
WT225221/Z/22/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
G1000861Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
WT098017Wellcome Trusthttp://dx.doi.org/10.13039/100004440
WT064890Wellcome Trusthttp://dx.doi.org/10.13039/100004440
MR/S003762/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
MC_UU_00007/10Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
336823Academy of Finlandhttp://dx.doi.org/10.13039/501100002341
MR/P009581/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
202802/Z/16/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
217065/Z/19/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
BRC-1215-2001National Institute for Health Researchhttp://dx.doi.org/10.13039/501100000272
MC_UU_00011/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
C18281/A29019Cancer Research UKhttp://dx.doi.org/10.13039/501100000289
PubMed ID: 36914875
Web of Science ID: WOS:001021322000014
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/114959
Publisher's version: https://doi.org/10.1038/s41588-023-01314-0

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