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Transcriptomic and connectomic correlates of differential spatial patterning among gliomas.

Romero-Garcia, R; Mandal, AS; Bethlehem, RAI; Crespo-Facorro, B; Hart, MG; Suckling, J (2023) Transcriptomic and connectomic correlates of differential spatial patterning among gliomas. Brain, 146 (3). pp. 1200-1211. ISSN 1460-2156 https://doi.org/10.1093/brain/awac378
SGUL Authors: Hart, Michael Gavin

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Abstract

Unravelling the complex events driving grade-specific spatial distribution of brain tumour occurrence requires rich datasets from both healthy individuals and patients. Here, we combined open-access data from The Cancer Genome Atlas, the UK Biobank and the Allen Brain Human Atlas to disentangle how the different spatial occurrences of glioblastoma multiforme and low-grade gliomas are linked to brain network features and the normative transcriptional profiles of brain regions. From MRI of brain tumour patients, we first constructed a grade-related frequency map of the regional occurrence of low-grade gliomas and the more aggressive glioblastoma multiforme. Using associated mRNA transcription data, we derived a set of differential gene expressions from glioblastoma multiforme and low-grade gliomas tissues of the same patients. By combining the resulting values with normative gene expressions from post-mortem brain tissue, we constructed a grade-related expression map indicating which brain regions express genes dysregulated in aggressive gliomas. Additionally, we derived an expression map of genes previously associated with tumour subtypes in a genome-wide association study (tumour-related genes). There were significant associations between grade-related frequency, grade-related expression and tumour-related expression maps, as well as functional brain network features (specifically, nodal strength and participation coefficient) that are implicated in neurological and psychiatric disorders. These findings identify brain network dynamics and transcriptomic signatures as key factors in regional vulnerability for glioblastoma multiforme and low-grade glioma occurrence, placing primary brain tumours within a well established framework of neurological and psychiatric cortical alterations.

Item Type: Article
Additional Information: © The Author(s) 2022. Published by Oxford University Press on behalf of the Guarantors of Brain. This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
Keywords: connectomic, gene expression, glioma, transcriptomic, Humans, Glioblastoma, Transcriptome, Genome-Wide Association Study, Connectome, Glioma, Brain Neoplasms, Humans, Glioma, Glioblastoma, Brain Neoplasms, Genome-Wide Association Study, Transcriptome, Connectome, glioma, gene expression, transcriptomic, connectomic, connectomic, gene expression, glioma, transcriptomic, 11 Medical and Health Sciences, 17 Psychology and Cognitive Sciences, Neurology & Neurosurgery
SGUL Research Institute / Research Centre: Academic Structure > Molecular and Clinical Sciences Research Institute (MCS)
Journal or Publication Title: Brain
ISSN: 1460-2156
Language: eng
Dates:
DateEvent
1 March 2023Published
18 October 2022Published Online
13 September 2022Accepted
Publisher License: Creative Commons: Attribution-Noncommercial 4.0
Projects:
Project IDFunderFunder ID
EMERGIA20_00139EMERGIA Junta da Andalucía programUNSPECIFIED
A25117Cancer Research UKhttp://dx.doi.org/10.13039/501100000289
PubMed ID: 36256589
Web of Science ID: WOS:000908331600001
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/114946
Publisher's version: https://doi.org/10.1093/brain/awac378

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