Molecular Epidemiology of SARS-CoV-2 by Sequencing.

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Yan, Y; Hu, Q (2022) Molecular Epidemiology of SARS-CoV-2 by Sequencing. Methods Mol Biol, 2452. pp. 19-32. ISSN 1940-6029 https://doi.org/10.1007/978-1-0716-2111-0_2
SGUL Authors: Hu, Qinxue

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Official URL: https://doi.org/10.1007/978-1-0716-2111-0_2

Abstract

Sequences of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) contains preliminary information on the phylodynamics and phylogeography of this new virus. A maximum clade credibility tree (MCCT) was constructed using available whole genome sequences of SARS-CoV-2 and highly similar whole genome sequences from bat SARS-like coronavirus, which are available in GenBank. In this chapter, we describe the molecular epidemiology of SARS-CoV-2 by sequencing the viral genomes from confirmed COVID-19 patients, utilizing methods such as target fragment amplification, sequencing, alignment, and maximum similarity mapping.

Item Type:

Article

Additional Information:

The version of record of this chapter, first published in Methods in Molecular Biology, is available online at Publisher’s website: https://doi.org/10.1007/978-1-0716-2111-0_2

Keywords:

COVID-19, Genotype, Molecular epidemiology, SARS-CoV-2, Sequencing, COVID-19, Genome, Viral, Humans, Molecular Epidemiology, Phylogeny, SARS-CoV-2, Humans, Phylogeny, Genome, Viral, Molecular Epidemiology, COVID-19, SARS-CoV-2, 0601 Biochemistry and Cell Biology, Developmental Biology

SGUL Research Institute / Research Centre:

Academic Structure > Infection and Immunity Research Institute (INII)

Journal or Publication Title:

Methods Mol Biol

ISSN:

1940-6029

Language:

eng

Dates:

Date	Event
14 May 2022	Published

Publisher License:

Publisher's own licence

Projects:

Project ID	Funder	Funder ID
BJ2020094	Wuxi Health Committee	UNSPECIFIED
GWLM202005	Chinese Public Health Alliance Program	UNSPECIFIED
ZDRC024	Wuxi Key Medical Talents Program	UNSPECIFIED

PubMed ID:

35554898