Prins, BP;
Mead, TJ;
Brody, JA;
Sveinbjornsson, G;
Ntalla, I;
Bihlmeyer, NA;
van den Berg, M;
Bork-Jensen, J;
Cappellani, S;
Van Duijvenboden, S;
et al.
Prins, BP; Mead, TJ; Brody, JA; Sveinbjornsson, G; Ntalla, I; Bihlmeyer, NA; van den Berg, M; Bork-Jensen, J; Cappellani, S; Van Duijvenboden, S; Klena, NT; Gabriel, GC; Liu, X; Gulec, C; Grarup, N; Haessler, J; Hall, LM; Iorio, A; Isaacs, A; Li-Gao, R; Lin, H; Liu, C-T; Lyytikäinen, L-P; Marten, J; Mei, H; Müller-Nurasyid, M; Orini, M; Padmanabhan, S; Radmanesh, F; Ramirez, J; Robino, A; Schwartz, M; van Setten, J; Smith, AV; Verweij, N; Warren, HR; Weiss, S; Alonso, A; Arnar, DO; Bots, ML; de Boer, RA; Dominiczak, AF; Eijgelsheim, M; Ellinor, PT; Guo, X; Felix, SB; Harris, TB; Hayward, C; Heckbert, SR; Huang, PL; Jukema, JW; Kähönen, M; Kors, JA; Lambiase, PD; Launer, LJ; Li, M; Linneberg, A; Nelson, CP; Pedersen, O; Perez, M; Peters, A; Polasek, O; Psaty, BM; Raitakari, OT; Rice, KM; Rotter, JI; Sinner, MF; Soliman, EZ; Spector, TD; Strauch, K; Thorsteinsdottir, U; Tinker, A; Trompet, S; Uitterlinden, A; Vaartjes, I; van der Meer, P; Völker, U; Völzke, H; Waldenberger, M; Wilson, JG; Xie, Z; Asselbergs, FW; Dörr, M; van Duijn, CM; Gasparini, P; Gudbjartsson, DF; Gudnason, V; Hansen, T; Kääb, S; Kanters, JK; Kooperberg, C; Lehtimäki, T; Lin, HJ; Lubitz, SA; Mook-Kanamori, DO; Conti, FJ; Newton-Cheh, CH; Rosand, J; Rudan, I; Samani, NJ; Sinagra, G; Smith, BH; Holm, H; Stricker, BH; Ulivi, S; Sotoodehnia, N; Apte, SS; van der Harst, P; Stefansson, K; Munroe, PB; Arking, DE; Lo, CW; Jamshidi, Y
(2018)
Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.
Genome Biol, 19 (1).
p. 87.
ISSN 1474-760X
https://doi.org/10.1186/s13059-018-1457-6
SGUL Authors: Jamshidi, Yalda
Abstract
BACKGROUND: Genome-wide association studies conducted on QRS duration, an electrocardiographic measurement associated with heart failure and sudden cardiac death, have led to novel biological insights into cardiac function. However, the variants identified fall predominantly in non-coding regions and their underlying mechanisms remain unclear. RESULTS: Here, we identify putative functional coding variation associated with changes in the QRS interval duration by combining Illumina HumanExome BeadChip genotype data from 77,898 participants of European ancestry and 7695 of African descent in our discovery cohort, followed by replication in 111,874 individuals of European ancestry from the UK Biobank and deCODE cohorts. We identify ten novel loci, seven within coding regions, including ADAMTS6, significantly associated with QRS duration in gene-based analyses. ADAMTS6 encodes a secreted metalloprotease of currently unknown function. In vitro validation analysis shows that the QRS-associated variants lead to impaired ADAMTS6 secretion and loss-of function analysis in mice demonstrates a previously unappreciated role for ADAMTS6 in connexin 43 gap junction expression, which is essential for myocardial conduction. CONCLUSIONS: Our approach identifies novel coding and non-coding variants underlying ventricular depolarization and provides a possible mechanism for the ADAMTS6-associated conduction changes.
Item Type: |
Article
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Additional Information: |
© The Author(s). 2018
Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
Keywords: |
ADAMTS6, Conduction, Exome chip, Meta-analysis, Bioinformatics, 05 Environmental Sciences, 06 Biological Sciences, 08 Information And Computing Sciences |
SGUL Research Institute / Research Centre: |
Academic Structure > Molecular and Clinical Sciences Research Institute (MCS) |
Journal or Publication Title: |
Genome Biol |
ISSN: |
1474-760X |
Language: |
eng |
Dates: |
Date | Event |
---|
17 July 2018 | Published | 23 May 2018 | Accepted |
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Publisher License: |
Creative Commons: Attribution 4.0 |
Projects: |
Project ID | Funder | Funder ID |
---|
HHSN268201100012C | NHLBI NIH HHS | UNSPECIFIED | RC2 HL102419 | NHLBI NIH HHS | UNSPECIFIED | R01 HL103612 | NHLBI NIH HHS | UNSPECIFIED | K23 NS059774 | NINDS NIH HHS | UNSPECIFIED | HHSN268201100009I | NHLBI NIH HHS | UNSPECIFIED | R01 HL120393 | NHLBI NIH HHS | UNSPECIFIED | K24 HL105780 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100010C | NHLBI NIH HHS | UNSPECIFIED | UL1 RR025005 | NCRR NIH HHS | UNSPECIFIED | P01 HL107147 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100008C | NHLBI NIH HHS | UNSPECIFIED | U01 HL080295 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100005G | NHLBI NIH HHS | UNSPECIFIED | R01 HL104156 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100008I | NHLBI NIH HHS | UNSPECIFIED | R01 HL092577 | NHLBI NIH HHS | UNSPECIFIED | R01 HL068986 | NHLBI NIH HHS | UNSPECIFIED | R01 HL059367 | NHLBI NIH HHS | UNSPECIFIED | U01 HL130114 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100007C | NHLBI NIH HHS | UNSPECIFIED | HHSN268200800007C | NHLBI NIH HHS | UNSPECIFIED | U01 HL120393 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100011I | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100011C | NHLBI NIH HHS | UNSPECIFIED | R01 HL086694 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201300048C | NHLBI NIH HHS | UNSPECIFIED | R01 HL087652 | NHLBI NIH HHS | UNSPECIFIED | U01 HG004402 | NHGRI NIH HHS | UNSPECIFIED | N01HC55222 | NHLBI NIH HHS | UNSPECIFIED | R01 HL128914 | NHLBI NIH HHS | UNSPECIFIED | N01HC85086 | NHLBI NIH HHS | UNSPECIFIED | R01 HL105756 | NHLBI NIH HHS | UNSPECIFIED | F32 AR063548 | NIAMS NIH HHS | UNSPECIFIED | P30 DK063491 | NIDDK NIH HHS | UNSPECIFIED | HHSN268201100006C | NHLBI NIH HHS | UNSPECIFIED | HHSN268201300049C | NHLBI NIH HHS | UNSPECIFIED | U01 HL098180 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201200036C | NHLBI NIH HHS | UNSPECIFIED | R01 NS059727 | NINDS NIH HHS | UNSPECIFIED | HHSN268201100005I | NHLBI NIH HHS | UNSPECIFIED | R01 HL132024 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201300047C | NHLBI NIH HHS | UNSPECIFIED | HHSN268201300050C | NHLBI NIH HHS | UNSPECIFIED | PG/12/38/29615 | British Heart Foundation | http://dx.doi.org/10.13039/501100000274 | N01HC85082 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100009C | NHLBI NIH HHS | UNSPECIFIED | R01 NS073344 | NINDS NIH HHS | UNSPECIFIED | N01HC85083 | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100005C | NHLBI NIH HHS | UNSPECIFIED | HHSN268201100007I | NHLBI NIH HHS | UNSPECIFIED | 083948 | Wellcome Trust | http://dx.doi.org/10.13039/100004440 | HHSN268201300046C | NHLBI NIH HHS | UNSPECIFIED | N01HC85079 | NHLBI NIH HHS | UNSPECIFIED | R01 AG023629 | NIA NIH HHS | UNSPECIFIED | R01 HL087641 | NHLBI NIH HHS | UNSPECIFIED | N01HC85080 | NHLBI NIH HHS | UNSPECIFIED | U54 GM115428 | NIGMS NIH HHS | UNSPECIFIED | K23 HL114724 | NHLBI NIH HHS | UNSPECIFIED | N01HC85081 | NHLBI NIH HHS | UNSPECIFIED | 085475 | Wellcome Trust | http://dx.doi.org/10.13039/100004440 | G9521010D | Medical Research Council | http://dx.doi.org/10.13039/501100000265 | PG/02/128 | British Heart Foundation | http://dx.doi.org/10.13039/501100000274 | RG/07/005/23633 | British Heart Foundation | http://dx.doi.org/10.13039/501100000274 | SP/08/005/25115 | British Heart Foundation | http://dx.doi.org/10.13039/501100000274 | MR/N025083/1 | Medical Research Council | http://dx.doi.org/10.13039/501100000265 |
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PubMed ID: |
30012220 |
|
Go to PubMed abstract |
URI: |
https://openaccess.sgul.ac.uk/id/eprint/110012 |
Publisher's version: |
https://doi.org/10.1186/s13059-018-1457-6 |
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