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Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6.

Prins, BP; Mead, TJ; Brody, JA; Sveinbjornsson, G; Ntalla, I; Bihlmeyer, NA; van den Berg, M; Bork-Jensen, J; Cappellani, S; Van Duijvenboden, S; et al. Prins, BP; Mead, TJ; Brody, JA; Sveinbjornsson, G; Ntalla, I; Bihlmeyer, NA; van den Berg, M; Bork-Jensen, J; Cappellani, S; Van Duijvenboden, S; Klena, NT; Gabriel, GC; Liu, X; Gulec, C; Grarup, N; Haessler, J; Hall, LM; Iorio, A; Isaacs, A; Li-Gao, R; Lin, H; Liu, C-T; Lyytikäinen, L-P; Marten, J; Mei, H; Müller-Nurasyid, M; Orini, M; Padmanabhan, S; Radmanesh, F; Ramirez, J; Robino, A; Schwartz, M; van Setten, J; Smith, AV; Verweij, N; Warren, HR; Weiss, S; Alonso, A; Arnar, DO; Bots, ML; de Boer, RA; Dominiczak, AF; Eijgelsheim, M; Ellinor, PT; Guo, X; Felix, SB; Harris, TB; Hayward, C; Heckbert, SR; Huang, PL; Jukema, JW; Kähönen, M; Kors, JA; Lambiase, PD; Launer, LJ; Li, M; Linneberg, A; Nelson, CP; Pedersen, O; Perez, M; Peters, A; Polasek, O; Psaty, BM; Raitakari, OT; Rice, KM; Rotter, JI; Sinner, MF; Soliman, EZ; Spector, TD; Strauch, K; Thorsteinsdottir, U; Tinker, A; Trompet, S; Uitterlinden, A; Vaartjes, I; van der Meer, P; Völker, U; Völzke, H; Waldenberger, M; Wilson, JG; Xie, Z; Asselbergs, FW; Dörr, M; van Duijn, CM; Gasparini, P; Gudbjartsson, DF; Gudnason, V; Hansen, T; Kääb, S; Kanters, JK; Kooperberg, C; Lehtimäki, T; Lin, HJ; Lubitz, SA; Mook-Kanamori, DO; Conti, FJ; Newton-Cheh, CH; Rosand, J; Rudan, I; Samani, NJ; Sinagra, G; Smith, BH; Holm, H; Stricker, BH; Ulivi, S; Sotoodehnia, N; Apte, SS; van der Harst, P; Stefansson, K; Munroe, PB; Arking, DE; Lo, CW; Jamshidi, Y (2018) Exome-chip meta-analysis identifies novel loci associated with cardiac conduction, including ADAMTS6. Genome Biol, 19 (1). p. 87. ISSN 1474-760X https://doi.org/10.1186/s13059-018-1457-6
SGUL Authors: Jamshidi, Yalda

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Abstract

BACKGROUND: Genome-wide association studies conducted on QRS duration, an electrocardiographic measurement associated with heart failure and sudden cardiac death, have led to novel biological insights into cardiac function. However, the variants identified fall predominantly in non-coding regions and their underlying mechanisms remain unclear. RESULTS: Here, we identify putative functional coding variation associated with changes in the QRS interval duration by combining Illumina HumanExome BeadChip genotype data from 77,898 participants of European ancestry and 7695 of African descent in our discovery cohort, followed by replication in 111,874 individuals of European ancestry from the UK Biobank and deCODE cohorts. We identify ten novel loci, seven within coding regions, including ADAMTS6, significantly associated with QRS duration in gene-based analyses. ADAMTS6 encodes a secreted metalloprotease of currently unknown function. In vitro validation analysis shows that the QRS-associated variants lead to impaired ADAMTS6 secretion and loss-of function analysis in mice demonstrates a previously unappreciated role for ADAMTS6 in connexin 43 gap junction expression, which is essential for myocardial conduction. CONCLUSIONS: Our approach identifies novel coding and non-coding variants underlying ventricular depolarization and provides a possible mechanism for the ADAMTS6-associated conduction changes.

Item Type: Article
Additional Information: © The Author(s). 2018 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
Keywords: ADAMTS6, Conduction, Exome chip, Meta-analysis, Bioinformatics, 05 Environmental Sciences, 06 Biological Sciences, 08 Information And Computing Sciences
SGUL Research Institute / Research Centre: Academic Structure > Molecular and Clinical Sciences Research Institute (MCS)
Journal or Publication Title: Genome Biol
ISSN: 1474-760X
Language: eng
Dates:
DateEvent
17 July 2018Published
23 May 2018Accepted
Publisher License: Creative Commons: Attribution 4.0
Projects:
Project IDFunderFunder ID
HHSN268201100012CNHLBI NIH HHSUNSPECIFIED
RC2 HL102419NHLBI NIH HHSUNSPECIFIED
R01 HL103612NHLBI NIH HHSUNSPECIFIED
K23 NS059774NINDS NIH HHSUNSPECIFIED
HHSN268201100009INHLBI NIH HHSUNSPECIFIED
R01 HL120393NHLBI NIH HHSUNSPECIFIED
K24 HL105780NHLBI NIH HHSUNSPECIFIED
HHSN268201100010CNHLBI NIH HHSUNSPECIFIED
UL1 RR025005NCRR NIH HHSUNSPECIFIED
P01 HL107147NHLBI NIH HHSUNSPECIFIED
HHSN268201100008CNHLBI NIH HHSUNSPECIFIED
U01 HL080295NHLBI NIH HHSUNSPECIFIED
HHSN268201100005GNHLBI NIH HHSUNSPECIFIED
R01 HL104156NHLBI NIH HHSUNSPECIFIED
HHSN268201100008INHLBI NIH HHSUNSPECIFIED
R01 HL092577NHLBI NIH HHSUNSPECIFIED
R01 HL068986NHLBI NIH HHSUNSPECIFIED
R01 HL059367NHLBI NIH HHSUNSPECIFIED
U01 HL130114NHLBI NIH HHSUNSPECIFIED
HHSN268201100007CNHLBI NIH HHSUNSPECIFIED
HHSN268200800007CNHLBI NIH HHSUNSPECIFIED
U01 HL120393NHLBI NIH HHSUNSPECIFIED
HHSN268201100011INHLBI NIH HHSUNSPECIFIED
HHSN268201100011CNHLBI NIH HHSUNSPECIFIED
R01 HL086694NHLBI NIH HHSUNSPECIFIED
HHSN268201300048CNHLBI NIH HHSUNSPECIFIED
R01 HL087652NHLBI NIH HHSUNSPECIFIED
U01 HG004402NHGRI NIH HHSUNSPECIFIED
N01HC55222NHLBI NIH HHSUNSPECIFIED
R01 HL128914NHLBI NIH HHSUNSPECIFIED
N01HC85086NHLBI NIH HHSUNSPECIFIED
R01 HL105756NHLBI NIH HHSUNSPECIFIED
F32 AR063548NIAMS NIH HHSUNSPECIFIED
P30 DK063491NIDDK NIH HHSUNSPECIFIED
HHSN268201100006CNHLBI NIH HHSUNSPECIFIED
HHSN268201300049CNHLBI NIH HHSUNSPECIFIED
U01 HL098180NHLBI NIH HHSUNSPECIFIED
HHSN268201200036CNHLBI NIH HHSUNSPECIFIED
R01 NS059727NINDS NIH HHSUNSPECIFIED
HHSN268201100005INHLBI NIH HHSUNSPECIFIED
R01 HL132024NHLBI NIH HHSUNSPECIFIED
HHSN268201300047CNHLBI NIH HHSUNSPECIFIED
HHSN268201300050CNHLBI NIH HHSUNSPECIFIED
PG/12/38/29615British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
N01HC85082NHLBI NIH HHSUNSPECIFIED
HHSN268201100009CNHLBI NIH HHSUNSPECIFIED
R01 NS073344NINDS NIH HHSUNSPECIFIED
N01HC85083NHLBI NIH HHSUNSPECIFIED
HHSN268201100005CNHLBI NIH HHSUNSPECIFIED
HHSN268201100007INHLBI NIH HHSUNSPECIFIED
083948Wellcome Trusthttp://dx.doi.org/10.13039/100004440
HHSN268201300046CNHLBI NIH HHSUNSPECIFIED
N01HC85079NHLBI NIH HHSUNSPECIFIED
R01 AG023629NIA NIH HHSUNSPECIFIED
R01 HL087641NHLBI NIH HHSUNSPECIFIED
N01HC85080NHLBI NIH HHSUNSPECIFIED
U54 GM115428NIGMS NIH HHSUNSPECIFIED
K23 HL114724NHLBI NIH HHSUNSPECIFIED
N01HC85081NHLBI NIH HHSUNSPECIFIED
085475Wellcome Trusthttp://dx.doi.org/10.13039/100004440
G9521010DMedical Research Councilhttp://dx.doi.org/10.13039/501100000265
PG/02/128British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
RG/07/005/23633British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
SP/08/005/25115British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
MR/N025083/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
PubMed ID: 30012220
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/110012
Publisher's version: https://doi.org/10.1186/s13059-018-1457-6

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