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Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.

Tsoi, LC; Spain, SL; Knight, J; Ellinghaus, E; Stuart, PE; Capon, F; Ding, J; Li, Y; Tejasvi, T; Gudjonsson, JE; et al. Tsoi, LC; Spain, SL; Knight, J; Ellinghaus, E; Stuart, PE; Capon, F; Ding, J; Li, Y; Tejasvi, T; Gudjonsson, JE; Kang, HM; Allen, MH; McManus, R; Novelli, G; Samuelsson, L; Schalkwijk, J; Ståhle, M; Burden, AD; Smith, CH; Cork, MJ; Estivill, X; Bowcock, AM; Krueger, GG; Weger, W; Worthington, J; Tazi-Ahnini, R; Nestle, FO; Hayday, A; Hoffmann, P; Winkelmann, J; Wijmenga, C; Langford, C; Edkins, S; Andrews, R; Blackburn, H; Strange, A; Band, G; Pearson, RD; Vukcevic, D; Spencer, CC; Deloukas, P; Mrowietz, U; Schreiber, S; Weidinger, S; Koks, S; Kingo, K; Esko, T; Metspalu, A; Lim, HW; Voorhees, JJ; Weichenthal, M; Wichmann, HE; Chandran, V; Rosen, CF; Rahman, P; Gladman, DD; Griffiths, CE; Reis, A; Kere, J; Collaborative Association Study of Psoriasis (CASP); Genetic Analysis of Psoriasis Consortium; Psoriasis Association Genetics Extension; Wellcome Trust Case Control Consortium 2; Nair, RP; Franke, A; Barker, JN; Abecasis, GR; Elder, JT; Trembath, RC (2012) Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity. Nature Genetics, 44 (12). pp. 1341-1348. ISSN 1546-1718 https://doi.org/10.1038/ng.2467
SGUL Authors: Markus, Hugh Stephen

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Abstract

To gain further insight into the genetic architecture of psoriasis, we conducted a meta-analysis of 3 genome-wide association studies (GWAS) and 2 independent data sets genotyped on the Immunochip, including 10,588 cases and 22,806 controls. We identified 15 new susceptibility loci, increasing to 36 the number associated with psoriasis in European individuals. We also identified, using conditional analyses, five independent signals within previously known loci. The newly identified loci shared with other autoimmune diseases include candidate genes with roles in regulating T-cell function (such as RUNX3, TAGAP and STAT3). Notably, they included candidate genes whose products are involved in innate host defense, including interferon-mediated antiviral responses (DDX58), macrophage activation (ZC3H12C) and nuclear factor (NF)-κB signaling (CARD14 and CARM1). These results portend a better understanding of shared and distinctive genetic determinants of immune-mediated inflammatory disorders and emphasize the importance of the skin in innate and acquired host defense.

Item Type: Article
Additional Information: Author’s manuscript is made available for academic research only, and cannot be used for commercial purposes without prior permission of the copyright holders. Made available here with permission from the publisher.
Keywords: CARD Signaling Adaptor Proteins, Core Binding Factor Alpha 3 Subunit, DEAD-box RNA Helicases, European Continental Ancestry Group, GTPase-Activating Proteins, Genetic Loci, Genetic Predisposition to Disease, Genome-Wide Association Study, Guanylate Cyclase, Humans, Immunity, Innate, Membrane Proteins, Oligonucleotide Array Sequence Analysis, Polymorphism, Single Nucleotide, Psoriasis, STAT3 Transcription Factor, Skin, T-Lymphocytes, Science & Technology, Life Sciences & Biomedicine, Genetics & Heredity, T-CELL DEVELOPMENT, GENOME-WIDE ASSOCIATION, GENE-EXPRESSION, CELIAC-DISEASE, TH17 DIFFERENTIATION, SIGNALING PATHWAYS, NEGATIVE REGULATOR, INTERFERON-GAMMA, COMMON VARIANTS, MULTIPLE COMMON, Developmental Biology, 11 Medical And Health Sciences, 06 Biological Sciences
Journal or Publication Title: Nature Genetics
ISSN: 1546-1718
Language: eng
Dates:
DateEvent
December 2012Published
Projects:
Project IDFunderFunder ID
068545/Z/02Wellcome TrustUNSPECIFIED
083948/Z/07/ZWellcome TrustUNSPECIFIED
085475/B/08/ZWellcome TrustUNSPECIFIED
085780Wellcome TrustUNSPECIFIED
090532Wellcome TrustUNSPECIFIED
098439Wellcome TrustUNSPECIFIED
17552Arthritis Research UKUNSPECIFIED
AR054966NIAMS NIH HHSUNSPECIFIED
G0000934Medical Research CouncilUNSPECIFIED
G0601387Medical Research CouncilUNSPECIFIED
G060I1387Medical Research CouncilUNSPECIFIED
G0700314Medical Research CouncilUNSPECIFIED
HG007022NHGRI NIH HHSUNSPECIFIED
K08 AR057763NIAMS NIH HHSUNSPECIFIED
K08 AR060802NIAMS NIH HHSUNSPECIFIED
MR/J006742/1Medical Research CouncilUNSPECIFIED
R01 AR042742NIAMS NIH HHSUNSPECIFIED
R01 AR042742NIAMS NIH HHSUNSPECIFIED
R01 AR050266NIAMS NIH HHSUNSPECIFIED
R01 AR050266NIAMS NIH HHSUNSPECIFIED
R01 AR050511NIAMS NIH HHSUNSPECIFIED
R01 AR050511NIAMS NIH HHSUNSPECIFIED
R01 AR054966NIAMS NIH HHSUNSPECIFIED
RC1 AR058315NIAMS NIH HHSUNSPECIFIED
UNSPECIFIEDCanadian Institutes of Health ResearchUNSPECIFIED
PubMed ID: 23143594
Web of Science ID: WOS:000311713200013
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/107313
Publisher's version: https://doi.org/10.1038/ng.2467

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