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Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis

Paternoster, L; Standl, M; Chen, CM; Ramasamy, A; Bønnelykke, K; Duijts, L; Ferreira, MA; Alves, AC; Thyssen, JP; Albrecht, E; et al. Paternoster, L; Standl, M; Chen, CM; Ramasamy, A; Bønnelykke, K; Duijts, L; Ferreira, MA; Alves, AC; Thyssen, JP; Albrecht, E; Baurecht, H; Feenstra, B; Sleiman, PM; Hysi, P; Warrington, NM; Curjuric, I; Myhre, R; Curtin, JA; Groen-Blokhuis, MM; Kerkhof, M; Sääf, A; Franke, A; Ellinghaus, D; Fölster-Holst, R; Dermitzakis, E; Montgomery, SB; Prokisch, H; Heim, K; Hartikainen, AL; Pouta, A; Pekkanen, J; Blakemore, AI; Buxton, JL; Kaakinen, M; Duffy, DL; Madden, PA; Heath, AC; Montgomery, GW; Thompson, PJ; Matheson, MC; Le Souëf, P; Australian Asthma Genetics Consortium (AAGC); St Pourcain, B; Smith, GD; Henderson, J; Kemp, JP; Timpson, NJ; Deloukas, P; Ring, SM; Wichmann, HE; Müller-Nurasyid, M; Novak, N; Klopp, N; Rodríguez, E; McArdle, W; Linneberg, A; Menné, T; Nohr, EA; Hofman, A; Uitterlinden, AG; van Duijn, CM; Rivadeneira, F; de Jongste, JC; van der Valk, RJ; Wjst, M; Jogi, R; Geller, F; Boyd, HA; Murray, JC; Kim, C; Mentch, F; March, M; Mangino, M; Spector, TD; Bataille, V; Pennell, CE; Holt, PG; Sly, P; Tiesler, CM; Thiering, E; Illig, T; Imboden, M; Nystad, W; Simpson, A; Hottenga, JJ; Postma, D; Koppelman, GH; Smit, HA; Söderhäll, C; Chawes, B; Kreiner-Møller, E; Bisgaard, H; Melén, E; Boomsma, DI; Custovic, A; Jacobsson, B; Probst-Hensch, NM; Palmer, LJ; Glass, D; Hakonarson, H; Melbye, M; Jarvis, DL; Jaddoe, VW; Gieger, C; Genetics of Overweight Young Adults (GOYA) Consortium; Strachan, DP; Martin, NG; Jarvelin, MR; Heinrich, J; Evans, DM; Weidinger, S; EArly Genetics & Lifecourse Epidemiology (EAGLE) Consortium (2012) Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis. NATURE GENETICS, 44 (2). 187 - 192. ISSN 1061-4036 https://doi.org/10.1038/ng.1017
SGUL Authors: Strachan, David Peter

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Abstract

Atopic dermatitis (AD) is a commonly occurring chronic skin disease with high heritability. Apart from filaggrin (FLG), the genes influencing atopic dermatitis are largely unknown. We conducted a genome-wide association meta-analysis of 5,606 affected individuals and 20,565 controls from 16 population-based cohorts and then examined the ten most strongly associated new susceptibility loci in an additional 5,419 affected individuals and 19,833 controls from 14 studies. Three SNPs reached genome-wide significance in the discovery and replication cohorts combined, including rs479844 upstream of OVOL1 (odds ratio (OR) = 0.88, P = 1.1 × 10−13) and rs2164983 near ACTL9 (OR = 1.16, P = 7.1 × 10−9), both of which are near genes that have been implicated in epidermal proliferation and differentiation, as well as rs2897442 in KIF3A within the cytokine cluster at 5q31.1 (OR = 1.11, P = 3.8 × 10−8). We also replicated association with the FLG locus and with two recently identified association signals at 11q13.5 (rs7927894; P = 0.008) and 20q13.33 (rs6010620; P = 0.002). Our results underline the importance of both epidermal barrier function and immune dysregulation in atopic dermatitis pathogenesis.

Item Type: Article
Additional Information: © 2012 Nature America, Inc. All rights reserved. This is the author's version of the article. The final published version can be found at
Keywords: Cell Differentiation, Chromosomes, Human, Pair 11, Chromosomes, Human, Pair 20, Chromosomes, Human, Pair 5, Cytokines, DNA-Binding Proteins, Dermatitis, Atopic, Epidermis, Female, Genetic Loci, Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Intermediate Filament Proteins, Kinesin, Male, Polymorphism, Single Nucleotide, Risk, Transcription Factors, Science & Technology, Life Sciences & Biomedicine, Genetics & Heredity, GENETICS & HEREDITY, CELLULAR MOTILITY, EXPRESSION, PSORIASIS, DISEASE, DIFFERENTIATION, VARIANTS, ASTHMA, SPERMATOGENESIS, MECHANISMS, FILAGGRIN
SGUL Research Institute / Research Centre: Academic Structure > Population Health Research Institute (INPH)
Journal or Publication Title: NATURE GENETICS
ISSN: 1061-4036
Related URLs:
Dates:
DateEvent
1 February 2012Published
Projects:
Project IDFunderFunder ID
068545Wellcome TrustUNSPECIFIED
076467Wellcome TrustUNSPECIFIED
084762Wellcome TrustUNSPECIFIED
092731Wellcome TrustUNSPECIFIED
G0401540Medical Research CouncilUNSPECIFIED
G0601361Medical Research CouncilUNSPECIFIED
G0601361(80219)Medical Research CouncilUNSPECIFIED
G0800582Medical Research CouncilUNSPECIFIED
G0800582(86758)Medical Research CouncilUNSPECIFIED
G9815508Medical Research CouncilUNSPECIFIED
G9815508(74882)Medical Research CouncilUNSPECIFIED
K05 AA017688NIAAA NIH HHSUNSPECIFIED
R01 DA012854NIDA NIH HHSUNSPECIFIED
Web of Science ID: WOS:000299664400018
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URI: https://openaccess.sgul.ac.uk/id/eprint/100177
Publisher's version: https://doi.org/10.1038/ng.1017

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