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Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations

Sakornsakolpat, P; Prokopenko, D; Lamontagne, M; Reeve, NF; Guyatt, AL; Jackson, VE; Shrine, N; Qiao, D; Bartz, TM; Kim, DK; et al. Sakornsakolpat, P; Prokopenko, D; Lamontagne, M; Reeve, NF; Guyatt, AL; Jackson, VE; Shrine, N; Qiao, D; Bartz, TM; Kim, DK; Lee, MK; Latourelle, JC; Li, X; Morrow, JD; Obeidat, M; Wyss, AB; Bakke, P; Barr, RG; Beaty, TH; Belinsky, SA; Brusselle, GG; Crapo, JD; de Jong, K; DeMeo, DL; Fingerlin, TE; Gharib, SA; Gulsvik, A; Hall, IP; Hokanson, JE; Kim, WJ; Lomas, DA; London, SJ; Meyers, DA; O'Connor, GT; Rennard, SI; Schwartz, DA; Sliwinski, P; Sparrow, D; Strachan, DP; Tal-Singer, R; Tesfaigzi, Y; Vestbo, J; Vonk, JM; Yim, J-J; Zhou, X; Bossé, Y; Manichaikul, A; Lahousse, L; Silverman, EK; Boezen, HM; Wain, LV; Tobin, MD; Hobbs, BD; Cho, MH; International COPD Genetics Consortium (2019) Genetic landscape of chronic obstructive pulmonary disease identifies heterogeneous cell-type and phenotype associations. NATURE GENETICS, 51 (3). pp. 494-505. ISSN 1061-4036 https://doi.org/10.1038/s41588-018-0342-2
SGUL Authors: Strachan, David Peter

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Abstract

Chronic obstructive pulmonary disease (COPD) is the leading cause of respiratory mortality worldwide. Genetic risk loci provide new insights into disease pathogenesis. We performed a genome-wide association study in 35,735 cases and 222,076 controls from the UK Biobank and additional studies from the International COPD Genetics Consortium. We identified 82 loci associated with P < 5 × 10−8; 47 of these were previously described in association with either COPD or population-based measures of lung function. Of the remaining 35 new loci, 13 were associated with lung function in 79,055 individuals from the SpiroMeta consortium. Using gene expression and regulation data, we identified functional enrichment of COPD risk loci in lung tissue, smooth muscle, and several lung cell types. We found 14 COPD loci shared with either asthma or pulmonary fibrosis. COPD genetic risk loci clustered into groups based on associations with quantitative imaging features and comorbidities. Our analyses provide further support for the genetic susceptibility and heterogeneity of COPD.

Item Type: Article
Additional Information: This is a post-peer-review, pre-copyedit version of an article published in Nature Genetics. The final authenticated version is available online at: http://dx.doi.org/10.1038/s41588-018-0342-2
Keywords: 11 Medical And Health Sciences, 06 Biological Sciences, Developmental Biology
SGUL Research Institute / Research Centre: Academic Structure > Population Health Research Institute (INPH)
Journal or Publication Title: NATURE GENETICS
ISSN: 1061-4036
Dates:
DateEvent
25 February 2019Published
20 December 2018Accepted
Publisher License: Publisher's own licence
URI: https://openaccess.sgul.ac.uk/id/eprint/110354
Publisher's version: https://doi.org/10.1038/s41588-018-0342-2

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