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Identification of small RNAs associated with RNA chaperone Hfq reveals a new stress response regulator in Actinobacillus pleuropneumoniae

da Silva, GC; Rossi, CC; Rosa, JN; Sanches, NM; Cardoso, DL; Li, Y; Witney, AA; Gould, KA; Fontes, PP; Callaghan, AJ; et al. da Silva, GC; Rossi, CC; Rosa, JN; Sanches, NM; Cardoso, DL; Li, Y; Witney, AA; Gould, KA; Fontes, PP; Callaghan, AJ; Bossé, JT; Langford, PR; Bazzolli, DMS (2022) Identification of small RNAs associated with RNA chaperone Hfq reveals a new stress response regulator in Actinobacillus pleuropneumoniae. Frontiers in Microbiology, 13. p. 1017278. ISSN 1664-302X https://doi.org/10.3389/fmicb.2022.1017278
SGUL Authors: Witney, Adam Austin

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Abstract

The RNA chaperone Hfq promotes the association of small RNAs (sRNAs) with cognate mRNAs, controlling the expression of bacterial phenotype. Actinobacillus pleuropneumoniae hfq mutants strains are attenuated for virulence in pigs, impaired in the ability to form biofilms, and more susceptible to stress, but knowledge of the extent of sRNA involvement is limited. Here, using A. pleuropneumoniae strain MIDG2331 (serovar 8), 14 sRNAs were identified by co-immunoprecipitation with Hfq and the expression of eight, identified as trans-acting sRNAs, were confirmed by Northern blotting. We focused on one of these sRNAs, named Rna01, containing a putative promoter for RpoE (stress regulon) recognition. Knockout mutants of rna01 and a double knockout mutant of rna01 and hfq, both had decreased biofilm formation and hemolytic activity, attenuation for virulence in Galleria mellonella, altered stress susceptibility, and an altered outer membrane protein profile. Rna01 affected extracellular vesicle production, size and toxicity in G. mellonella. qRT-PCR analysis of rna01 and putative cognate mRNA targets indicated that Rna01 is associated with the extracytoplasmic stress response. This work increases our understanding of the multilayered and complex nature of the influence of Hfq-dependent sRNAs on the physiology and virulence of A. pleuropneumoniae.

Item Type: Article
Additional Information: Copyright © 2022 da Silva, Rossi, Rosa, Sanches, Cardoso, Li, Witney, Gould, Fontes, Callaghan, Bossé, Langford and Bazzolli. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
Keywords: 0502 Environmental Science and Management, 0503 Soil Sciences, 0605 Microbiology
SGUL Research Institute / Research Centre: Academic Structure > Infection and Immunity Research Institute (INII)
Journal or Publication Title: Frontiers in Microbiology
ISSN: 1664-302X
Dates:
DateEvent
4 October 2022Published
9 September 2022Accepted
Publisher License: Creative Commons: Attribution 4.0
Projects:
Project IDFunderFunder ID
201840/2011-1Conselho Nacional de Desenvolvimento Científico e Tecnológicohttp://dx.doi.org/10.13039/501100003593
407849/2012-2Conselho Nacional de Desenvolvimento Científico e Tecnológicohttp://dx.doi.org/10.13039/501100003593
142495/2014-0Conselho Nacional de Desenvolvimento Científico e Tecnológicohttp://dx.doi.org/10.13039/501100003593
141328/2018Conselho Nacional de Desenvolvimento Científico e Tecnológicohttp://dx.doi.org/10.13039/501100003593
APQ-01586-18Fundação de Amparo à Pesquisa do Estado de Minas Geraishttp://dx.doi.org/10.13039/501100004901
APQ-00772-19Fundação de Amparo à Pesquisa do Estado de Minas Geraishttp://dx.doi.org/10.13039/501100004901
APQ-01433-22Fundação de Amparo à Pesquisa do Estado de Minas Geraishttp://dx.doi.org/10.13039/501100004901
23038.019105/2016-86CAPES/PROEXUNSPECIFIED
23038.002486/2018-26CAPES/PROEXUNSPECIFIED
Núcleo de Microscopia e Microanálise–UFVFinanciadora de Estudos e Projetoshttp://dx.doi.org/10.13039/501100004809
BB/K021109/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/G019177/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/M023052/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/M020576/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/S020543/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/P001262/1Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
BB/G018553Biotechnology and Biological Sciences Research Councilhttp://dx.doi.org/10.13039/501100000268
CBB-APQ-00689-16Conselho Nacional das Fundações Estaduais de Amparo à Pesquisahttp://dx.doi.org/10.13039/501100019831
URI: https://openaccess.sgul.ac.uk/id/eprint/114889
Publisher's version: https://doi.org/10.3389/fmicb.2022.1017278

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