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Knowledge representation and learning of operator clinical workflow from full-length routine fetal ultrasound scan videos.

Sharma, H; Drukker, L; Chatelain, P; Droste, R; Papageorghiou, AT; Noble, JA (2021) Knowledge representation and learning of operator clinical workflow from full-length routine fetal ultrasound scan videos. Med Image Anal, 69. p. 101973. ISSN 1361-8423 https://doi.org/10.1016/j.media.2021.101973
SGUL Authors: Papageorghiou, Aris

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Abstract

Ultrasound is a widely used imaging modality, yet it is well-known that scanning can be highly operator-dependent and difficult to perform, which limits its wider use in clinical practice. The literature on understanding what makes clinical sonography hard to learn and how sonography varies in the field is sparse, restricted to small-scale studies on the effectiveness of ultrasound training schemes, the role of ultrasound simulation in training, and the effect of introducing scanning guidelines and standards on diagnostic image quality. The Big Data era, and the recent and rapid emergence of machine learning as a more mainstream large-scale data analysis technique, presents a fresh opportunity to study sonography in the field at scale for the first time. Large-scale analysis of video recordings of full-length routine fetal ultrasound scans offers the potential to characterise differences between the scanning proficiency of experts and trainees that would be tedious and time-consuming to do manually due to the vast amounts of data. Such research would be informative to better understand operator clinical workflow when conducting ultrasound scans to support skills training, optimise scan times, and inform building better user-machine interfaces. This paper is to our knowledge the first to address sonography data science, which we consider in the context of second-trimester fetal sonography screening. Specifically, we present a fully-automatic framework to analyse operator clinical workflow solely from full-length routine second-trimester fetal ultrasound scan videos. An ultrasound video dataset containing more than 200 hours of scan recordings was generated for this study. We developed an original deep learning method to temporally segment the ultrasound video into semantically meaningful segments (the video description). The resulting semantic annotation was then used to depict operator clinical workflow (the knowledge representation). Machine learning was applied to the knowledge representation to characterise operator skills and assess operator variability. For video description, our best-performing deep spatio-temporal network shows favourable results in cross-validation (accuracy: 91.7%), statistical analysis (correlation: 0.98, p < 0.05) and retrospective manual validation (accuracy: 76.4%). For knowledge representation of operator clinical workflow, a three-level abstraction scheme consisting of a Subject-specific Timeline Model (STM), Summary of Timeline Features (STF), and an Operator Graph Model (OGM), was introduced that led to a significant decrease in dimensionality and computational complexity compared to raw video data. The workflow representations were learnt to discriminate between operator skills, where a proposed convolutional neural network-based model showed most promising performance (cross-validation accuracy: 98.5%, accuracy on unseen operators: 76.9%). These were further used to derive operator-specific scanning signatures and operator variability in terms of type, order and time distribution of constituent tasks.

Item Type: Article
Additional Information: © 2021 The Authors. Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/)
Keywords: Clinical workflow, Convolutional neural networks, Deep learning, Fetal ultrasonography, Knowledge representation, Skill assessment, Spatio-temporal analysis, Ultrasound image analysis, Video understanding, Computer Simulation, Female, Humans, Neural Networks, Computer, Pregnancy, Retrospective Studies, Ultrasonography, Prenatal, Workflow, Humans, Ultrasonography, Prenatal, Retrospective Studies, Pregnancy, Computer Simulation, Female, Workflow, Neural Networks, Computer, Clinical workflow, Fetal ultrasonography, Ultrasound image analysis, Video understanding, Knowledge representation, Skill assessment, Spatio-temporal analysis, Deep learning, Convolutional neural networks, 09 Engineering, 11 Medical and Health Sciences, Nuclear Medicine & Medical Imaging
SGUL Research Institute / Research Centre: Academic Structure > Institute of Medical & Biomedical Education (IMBE)
Academic Structure > Institute of Medical & Biomedical Education (IMBE) > Centre for Clinical Education (INMECE )
Journal or Publication Title: Med Image Anal
ISSN: 1361-8423
Language: eng
Dates:
DateEvent
4 February 2021Published
23 January 2021Published Online
11 January 2021Accepted
Publisher License: Creative Commons: Attribution-Noncommercial-No Derivative Works 4.0
Projects:
Project IDFunderFunder ID
UNSPECIFIEDDepartment of HealthUNSPECIFIED
ERC-ADG-2015 694581European Research Councilhttp://dx.doi.org/10.13039/501100000781
EP/M013774/1Engineering and Physical Sciences Research Councilhttp://dx.doi.org/10.13039/501100000266
PubMed ID: 33550004
Web of Science ID: WOS:000639618600002
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/114770
Publisher's version: https://doi.org/10.1016/j.media.2021.101973

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