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Automated arteriole and venule classification using deep learning for retinal images from the UK Biobank cohort

Welikala, R; Foster, P; Whincup, P; Rudnicka, A; Owen, C; Strachan, DP; Barman, S; UK Biobank Eye & Vision Consortium (2017) Automated arteriole and venule classification using deep learning for retinal images from the UK Biobank cohort. COMPUTERS IN BIOLOGY AND MEDICINE, 90. pp. 23-32. ISSN 0010-4825 https://doi.org/10.1016/j.compbiomed.2017.09.005
SGUL Authors: Owen, Christopher Grant Strachan, David Peter Whincup, Peter Hynes

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Abstract

The morphometric characteristics of the retinal vasculature are associated with future risk of many systemic and vascular diseases. However, analysis of data from large population based studies is needed to help resolve uncertainties in some of these associations. This requires automated systems that extract quantitative measures of vessel morphology from large numbers of retinal images. Associations between retinal vessel morphology and disease precursors/outcomes may be similar or opposing for arterioles and venules. Therefore, the accurate detection of the vessel type is an important element in such automated systems. This paper presents a deep learning approach for the automatic classification of arterioles and venules across the entire retinal image, including vessels located at the optic disc. This comprises of a convolutional neural network whose architecture contains six learned layers: three convolutional and three fully-connected. Complex patterns are automatically learnt from the data, which avoids the use of hand crafted features. The method is developed and evaluated using 835,914 centreline pixels derived from 100 retinal images selected from the 135,867 retinal images obtained at the UK Biobank (large population-based cohort study of middle aged and older adults) baseline examination. This is a challenging dataset in respect to image quality and hence arteriole/venule classification is required to be highly robust. The method achieves a significant increase in accuracy of 8.1% when compared to the baseline method, resulting in an arteriole/venule classification accuracy of 86.97% (per pixel basis) over the entire retinal image.

Item Type: Article
Additional Information: © 2017. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/
Keywords: Biomedical Engineering, 08 Information And Computing Sciences, 11 Medical And Health Sciences, 17 Psychology And Cognitive Sciences
SGUL Research Institute / Research Centre: Academic Structure > Population Health Research Institute (INPH)
Journal or Publication Title: COMPUTERS IN BIOLOGY AND MEDICINE
ISSN: 0010-4825
Dates:
DateEvent
1 November 2017Published
8 September 2017Published Online
5 September 2017Accepted
Publisher License: Creative Commons: Attribution-Noncommercial-No Derivative Works 4.0
Projects:
Project IDFunderFunder ID
MR/L02005X/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
PG/15/101/31889British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
1477/8Fight for SightUNSPECIFIED
URI: https://openaccess.sgul.ac.uk/id/eprint/109139
Publisher's version: https://doi.org/10.1016/j.compbiomed.2017.09.005

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