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Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis.

D'Urso, S; Rajbhandari, D; Peach, E; de Guzman, E; Li, Q; Medland, SE; Gordon, SD; Martin, NG; CHARGE Inflammation Working Group, ; Ligthart, S; et al. D'Urso, S; Rajbhandari, D; Peach, E; de Guzman, E; Li, Q; Medland, SE; Gordon, SD; Martin, NG; CHARGE Inflammation Working Group; Ligthart, S; Brown, MA; Powell, J; McArthur, C; Rhodes, A; Meyer, J; Finfer, S; Myburgh, J; Blumenthal, A; Cohen, J; Venkatesh, B; Cuellar-Partida, G; Evans, DM (2020) Septic Shock: A Genomewide Association Study and Polygenic Risk Score Analysis. Twin Res Hum Genet, 23 (4). pp. 204-213. ISSN 1832-4274 https://doi.org/10.1017/thg.2020.60
SGUL Authors: Rhodes, Andrew

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Abstract

Previous genetic association studies have failed to identify loci robustly associated with sepsis, and there have been no published genetic association studies or polygenic risk score analyses of patients with septic shock, despite evidence suggesting genetic factors may be involved. We systematically collected genotype and clinical outcome data in the context of a randomized controlled trial from patients with septic shock to enrich the presence of disease-associated genetic variants. We performed genomewide association studies of susceptibility and mortality in septic shock using 493 patients with septic shock and 2442 population controls, and polygenic risk score analysis to assess genetic overlap between septic shock risk/mortality with clinically relevant traits. One variant, rs9489328, located in AL589740.1 noncoding RNA, was significantly associated with septic shock (p = 1.05 × 10-10); however, it is likely a false-positive. We were unable to replicate variants previously reported to be associated (p < 1.00 × 10-6 in previous scans) with susceptibility to and mortality from sepsis. Polygenic risk scores for hematocrit and granulocyte count were negatively associated with 28-day mortality (p = 3.04 × 10-3; p = 2.29 × 10-3), and scores for C-reactive protein levels were positively associated with susceptibility to septic shock (p = 1.44 × 10-3). Results suggest that common variants of large effect do not influence septic shock susceptibility, mortality and resolution; however, genetic predispositions to clinically relevant traits are significantly associated with increased susceptibility and mortality in septic individuals.

Item Type: Article
Additional Information: This article has been published in a revised form in Twin Research and Human Genetics [http://doi.org/10.1017/thg.2020.60]. This version is free to view and download for private research and study only. Not for re-distribution or re-use. © The Author(s), 2020.
Keywords: Genetic association study, genetic risk scores, genomics, sepsis, septic shock, CHARGE Inflammation Working Group, Genetic association study, genetic risk scores, genomics, sepsis, septic shock, Genetics & Heredity, 1114 Paediatrics and Reproductive Medicine, 1103 Clinical Sciences, 1702 Cognitive Sciences
SGUL Research Institute / Research Centre: Academic Structure > Molecular and Clinical Sciences Research Institute (MCS)
Academic Structure > Molecular and Clinical Sciences Research Institute (MCS) > Cell Sciences (INCCCS)
Journal or Publication Title: Twin Res Hum Genet
ISSN: 1832-4274
Language: eng
Dates:
DateEvent
5 August 2020Published
Publisher License: Publisher's own licence
Projects:
Project IDFunderFunder ID
APP1031119National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
APP1084325National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
GNT1085159National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
APP1137714National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
APP1107599National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
APP1103623National Health and Medical Research Councilhttp://dx.doi.org/10.13039/501100000925
PubMed ID: 32755526
Web of Science ID: WOS:000565892700002
Go to PubMed abstract
URI: https://openaccess.sgul.ac.uk/id/eprint/112272
Publisher's version: https://doi.org/10.1017/thg.2020.60

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