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Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders

Ligthart, S; Vaez, A; Võsa, U; Stathopoulou, MG; de Vries, PS; Prins, BP; Van der Most, PJ; Tanaka, T; Naderi, E; Rose, LM; et al. Ligthart, S; Vaez, A; Võsa, U; Stathopoulou, MG; de Vries, PS; Prins, BP; Van der Most, PJ; Tanaka, T; Naderi, E; Rose, LM; Wu, Y; Karlsson, R; Barbalic, M; Lin, H; Pool, R; Zhu, G; Macé, A; Sidore, C; Trompet, S; Mangino, M; Sabater-Lleal, M; Kemp, JP; Abbasi, A; Kacprowski, T; Verweij, N; Smith, AV; Huang, T; Marzi, C; Feitosa, MF; Lohman, KK; Kleber, ME; Milaneschi, Y; Mueller, C; Huq, M; Vlachopoulou, E; Lyytikäinen, L-P; Oldmeadow, C; Deelen, J; Perola, M; Zhao, JH; Feenstra, B; LifeLines Cohort Study; Amini, M; CHARGE Inflammation Working Group; Lahti, J; Schraut, KE; Fornage, M; Suktitipat, B; Chen, W-M; Li, X; Nutile, T; Malerba, G; Luan, J; Bak, T; Schork, N; Del Greco M, F; Thiering, E; Mahajan, A; Marioni, RE; Mihailov, E; Eriksson, J; Ozel, AB; Zhang, W; Nethander, M; Cheng, Y-C; Aslibekyan, S; Ang, W; Gandin, I; Yengo, L; Portas, L; Kooperberg, C; Hofer, E; Rajan, KB; Schurmann, C; den Hollander, W; Ahluwalia, TS; Zhao, J; Draisma, HHM; Ford, I; Timpson, N; Teumer, A; Huang, H; Wahl, S; Liu, YM; Huang, J; Uh, H-W; Geller, F; Joshi, PK; Yanek, LR; Trabetti, E; Lehne, B; Vozzi, D; Verbanck, M; Biino, G; Saba, Y; Meulenbelt, I; O'Connell, JR; Laakso, M; Giulianini, F; Magnusson, PKE; Ballantyne, CM; Hottenga, JJ; Montgomery, GW; Rivadineira, F; Rueedi, R; Steri, M; Herzig, K-H; Stott, DJ; Menni, C; Frånberg, M; St Pourcain, B; Felix, SB; Pers, TH; Bakker, SJL; Kraft, P; Peters, A; Vaidya, D; Delgado, G; Smit, JH; Großmann, V; Sinisalo, J; Seppälä, I; Williams, SR; Holliday, EG; Moed, M; Langenberg, C; Räikkönen, K; Ding, J; Campbell, H; Sale, MM; Chen, Y-DI; James, AL; Ruggiero, D; Soranzo, N; Hartman, CA; Smith, EN; Berenson, GS; Fuchsberger, C; Hernandez, D; Tiesler, CMT; Giedraitis, V; Liewald, D; Fischer, K; Mellström, D; Larsson, A; Wang, Y; Scott, WR; Lorentzon, M; Beilby, J; Ryan, KA; Pennell, CA; Vuckovic, D; Balkau, B; Pina Concas, M; Schmidt, R; Mendes de Leon, CF; Bottinger, EP; Kloppenburg, M; Paternoster, L; Boehnke, M; Musk, AW; Willemsen, G; Evans, DM; Madden, PAF; Kähönen, M; Kutalik, Z; Zoledziewska, M; Karhunen, V; Kritchevsky, SB; Sattar, N; Lachance, G; Clarke, R; Harris, TB; Raitakari, OT; Attia, JR; van Heemst, D; Kajantie, E; Sorice, R; Gambaro, G; Scott, RA; Hicks, AA; Ferrucci, L; Standl, M; Lindgren, CM; Starr, JM; Karlsson, M; Lind, L; Li, JZ; Chambers, JC; Mori, TA; de Geus, EJCN; Heath, AC; Martin, NG; Auvinen, J; Buckley, BB; de Craen, AJM; Waldenberger, M; Strauch, K; Meitinger, T; Scott, RJ; McEvoy, M; Beekman, M; Bombieri, C; Ridker, PM; Mohlke, KL; Pedersen, NL; Morrison, AC; Boomsma, DI; Whitfield, JB; Strachan, DP; Hofman, A; Vollenweider, P; Cucca, F; Jarvelin, M-R; Jukema, JW; Spector, TD; Hamsten, A; Zeller, T; Uitterlinden, AG; Nauck, M; Gudnason, V; Qi, L; Grallert, H; Borecki, IB; Rotter, JI; März, W; Wild, PS; Lokki, M-L; Boyle, M; Salomaa, V; Melbye, M; Eriksson, JG; Wilson, JF; Penninx, BWJH; Becker, DM; Worrall, BB; Gibson, G; Krauss, RM; Ciullo, M; Zaza, G; Wareham, NJ; Oldehinkel, AJ; Palmer, LJ; Murray, SS; Pramstaller, PP; Bandinelli, S; Heinrich, J; Ingelsson, E; Deary, IJ; Mägi, R; Vandenput, L; van der Harst, P; Desch, KC; Kooner, JS; Ohlsson, C; Hayward, C; Lehtimäki, T; Shuldiner, AR; Arnett, DK; Beilin, LJ; Robino, A; Froguel, P; Pirastu, M; Jess, T; Koenig, W; Loos, RJF; Evans, DA; Schmidt, H; Smith, GD; Slagboom, PE; Eiriksdottir, G; Morris, AP; Psaty, BM; Tracy, RP; Nolte, IM; Boerwinkle, E; Visvikis-Siest, S; Reiner, AP; Gross, M; Bis, JC; Franke, L; Franco, OH; Benjamin, EJ; Chasman, DI; Dupuis, J; Snieder, H; Dehghan, A; Alizadeh, BZ (2018) Genome Analyses of >200,000 Individuals Identify 58 Loci for Chronic Inflammation and Highlight Pathways that Link Inflammation and Complex Disorders. American Journal of Human Genetics, 103 (5). pp. 691-706. ISSN 1537-6605 https://doi.org/10.1016/j.ajhg.2018.09.009
SGUL Authors: Strachan, David Peter

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Abstract

C-reactive protein (CRP) is a sensitive biomarker of chronic low-grade inflammation and is associated with multiple complex diseases. The genetic determinants of chronic inflammation remain largely unknown, and the causal role of CRP in several clinical outcomes is debated. We performed two genome-wide association studies (GWASs), on HapMap and 1000 Genomes imputed data, of circulating amounts of CRP by using data from 88 studies comprising 204,402 European individuals. Additionally, we performed in silico functional analyses and Mendelian randomization analyses with several clinical outcomes. The GWAS meta-analyses of CRP revealed 58 distinct genetic loci (p < 5 × 10−8). After adjustment for body mass index in the regression analysis, the associations at all except three loci remained. The lead variants at the distinct loci explained up to 7.0% of the variance in circulating amounts of CRP. We identified 66 gene sets that were organized in two substantially correlated clusters, one mainly composed of immune pathways and the other characterized by metabolic pathways in the liver. Mendelian randomization analyses revealed a causal protective effect of CRP on schizophrenia and a risk-increasing effect on bipolar disorder. Our findings provide further insights into the biology of inflammation and could lead to interventions for treating inflammation and its clinical consequences.

Item Type: Article
Additional Information: © 2018. This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/
Keywords: Genetics & Heredity, 06 Biological Sciences, 11 Medical And Health Sciences
SGUL Research Institute / Research Centre: Academic Structure > Population Health Research Institute (INPH)
Journal or Publication Title: American Journal of Human Genetics
ISSN: 1537-6605
Dates:
DateEvent
1 November 2018Published
20 September 2018Accepted
Publisher License: Creative Commons: Attribution-Noncommercial-No Derivative Works 4.0
Projects:
Project IDFunderFunder ID
102215/2/13/2Wellcome Trusthttp://dx.doi.org/10.13039/100004440
MC_UU_12013/4Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
G0000934Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
068545/Z/02Wellcome Trusthttp://dx.doi.org/10.13039/100004440
076113/B/04/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
079895Wellcome Trusthttp://dx.doi.org/10.13039/100004440
MC_UU_12015/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
MR/J012165/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
MC_UU_12013/4Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
MR/K026992/1Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
SP/04/002British Heart Foundationhttp://dx.doi.org/10.13039/501100000274
G0601966Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
G0700931Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
084723/Z/08/ZWellcome Trusthttp://dx.doi.org/10.13039/100004440
G0500539Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
G0600705Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
G1002319Medical Research Councilhttp://dx.doi.org/10.13039/501100000265
WT064890Wellcome Trusthttp://dx.doi.org/10.13039/100004440
WT098017Wellcome Trusthttp://dx.doi.org/10.13039/100004440
WT090532Wellcome Trusthttp://dx.doi.org/10.13039/100004440
WT098017Wellcome Trusthttp://dx.doi.org/10.13039/100004440
075491/Z/04Wellcome Trusthttp://dx.doi.org/10.13039/100004440
URI: https://openaccess.sgul.ac.uk/id/eprint/110162
Publisher's version: https://doi.org/10.1016/j.ajhg.2018.09.009

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